Refolding Record:
Protein | |
---|---|
Protein Name | RecJ Single-stranded DNA specific exonuclease |
Abbreviated Name | RecJ |
SCOP Family | Exonuclease RecJ |
Structure Notes | |
Organism | Thermus thermophilus |
UniProt Accession | Q93R48 |
SCOP Unique ID | n/a |
Structure Solved | |
Class | Alpha/Beta |
Molecularity | Monomer |
Construct | |
---|---|
Full Length | y |
Domain | n/a |
Chimera | n/a |
Variants | n/a |
Chain Length | 550 |
Molecular Weight | 60197.4 |
Pi | 5.84 |
Molecular Weight | 60197.4 |
Disulphides | 0 |
Full Sequence |
MGHHHHHHHHHHSSGHIDDDDLHMRDRVRWRVL SLPPLAQWRE VMAALEVGPE AALAYWHRGF RRKEDLDPPL ALLPLKGLRE AAALLEEALR QGKRIRVHGD YDADGLTGTA ILVRGLAALG ADVHPFIPHR LEEGYGVLME RVPEHLEASD LFLTVDCGIT NHAELRELLE NGVEVIVTDH HTPGKTPSPG LVVHPALTPD LKEKPTGAGV VFLLLWALHE RLGLPPPLEY ADLAAVGTIA DVAPLWGWNR ALVKEGLARI PASSWVGLRL LAEAVGYTGK AVEVAFRIAP RINAASRLGE AEKALRLLLT DDAAEAQALV GELHRLNARR QTLEEAMLRK LLPQADPEAK AIVLLDPEGH PGVMGIVASR ILEATLRPVF LVAQGKGTVR SLAPISAVEA LRSAEDLLLR YGGHKEAAGF AMDEALFPAF KARVEAYAAR FPDPVREVAL LDLLPEPGLL PQVFRELALL EPYGEGNPEP LFLLFGAPEE ARRLGEGRHL AFRLKGVRVL AWKQGDLALP PEVEVAGLLS ENAWNGHLAY EVQAVDL
|
Notes | n/a |
Expression | |
---|---|
Report | Yamagata A, Masui R, Kakuta Y, Kuramitsu S, Fukuyama K (2001) Nucleic Acids Research, 29, 4617-4624 |
Project Aim | Structure-Function |
Fusion | N-terminal hexahistidine tag |
Protein Expression and Production | Protein recombinantly expressed as and refolded from inclusion bodies. |
Expression Host | Escherichia coli |
Expression Strain | BL21(DE3) |
Expression Temp | 30.0 |
Expression Time | 3h |
Expression Vector | pET19b |
Expression Protocol | Cells were grown in 5L of 2xTY medium with 100microg/ml ampicillin at 30degC. When A600 reached 0.4, 0.4mM IPTG was added. Cells were grown for a further 3h then harvested by centrifugation and stored at -20degC |
Method of Induction | IPTG |
Cell Density at Induction | OD 600 = 0.4 |
Cell Disruption Method | Sonication |
Lytic Agent | None |
Pre-Refolding Purification | Metal affinity chromatography |
Solubility | insoluble |
Refolding | |
---|---|
Refolding Method | Dialysis |
Wash Buffer | 20mM TrisHCl, 500mM NaCl, 10% glycerol, 5mM imidazole, 0.5mM PMSF pH 7.9 |
Solubilization Buffer | 6M urea, 20mM TrisHCl, 500mM NaCl, 10% glycerol, 5mM imidazol pH 7.9 |
Refolding Buffer | 20mM TrisHCl, 0.1mM EDTA, 100mM NaCl, 10% glycerol pH 7.5 |
Pre-Refolding Purification | Metal affinity chromatography |
Tag Cleaved | no |
Refolding pH | 7.5 |
Refolding Temperature | 4.0 |
Protein Concentration | n/a |
Refolding Time | n/a |
Redox Agent | None |
Redox Agent Concentration | n/a |
Refolding Protocol | 10g frozen cells were thawed and resuspended in 80ml wash buffer then sonicated. The cell lysate was centrifuged (20000g, 15min) and the pellet was collected and washed with 80ml wash buffer. The protein was then extracted from the pellet in 80ml solubilization buffer and incubated at room temperature for 60min. After centrifugation (39000g, 60min), the supernatant was loaded onto a 5ml Ni-NTA column. The column was washed with 60ml solubilization buffer and the protein was eluted with 20ml solubilization buffer containing 100ml imidazole. The protein was then refolded by multi-step dialysis against solubilization buffer containing successively lower concentrations of urea (4,2,1M), followed by a final dialysis step against refolding buffer. The soluble protein was then collected by centrifugation (39000g, 60min) and purified further using a MonQ column. |
Refolding Assay | Far-UV Circular Dichroism,SDS-PAGE,Gel filtration chromatography |
Refolding Chaperones | None |
Refolding Additives | Glycerol |
Additives Concentration | 10% |
Refolding Yield | 3mg/10g cellss |
Purity | n/a |
Notes | n/a |